DistAMo is a versatile tool for analyzing motif distributions in bacteria, archaea and viruses. It allows for an analysis of motif over/underrepresentation from the level of single genes to the level of whole replicons.
The DistAMo web interface provides the data of thousands of complete bacterial, archaeal and viral genomes for a quick and easy motif analysis. The algorithm considers the restrictions on DNA sequences by protein coding for a precise estimation of motif over- and underrepresentation.
For a detailed description see: